Index

_

__add__() (PhenoMesh method) __contains__() (OperationRegistry method) __init__() (OperationRegistry method) (PhenoMesh method) (Pipeline method) (PipelineContext method) (StepConfig method)

__len__() (Pipeline method) __repr__() (PhenoMesh method) (Pipeline method) __str__() (PhenoMesh method)

B

boundary_edges() (PhenoMesh method)

boundary_points() (PhenoMesh method)

C

clean() (PhenoMesh method) clip() (PhenoMesh method) compute_center_of_mass() (PhenoMesh method) compute_curvature() (PhenoMesh method) compute_geodesic_distance() (PhenoMesh method) compute_normals() (PhenoMesh method) ConfigurationError contour (PhenoMesh property) (PipelineContext attribute), [1]

contour() (in module phenotastic.mesh) copy() (PhenoMesh method) correct_bad_mesh() (in module phenotastic.mesh) (PhenoMesh method) correct_normal_orientation() (in module phenotastic.mesh) (PhenoMesh method) create_cellular_mesh() (in module phenotastic.mesh) create_mesh() (in module phenotastic.mesh) curvature (PipelineContext attribute), [1]

D

decimate() (PhenoMesh method) define_meristem() (in module phenotastic.domains) (in module phenotastic.mesh) (PhenoMesh method)

domain_data (PipelineContext attribute), [1] domains (PipelineContext attribute), [1] drop_skirt() (in module phenotastic.mesh) (PhenoMesh method)

E

ecft() (in module phenotastic.mesh) (PhenoMesh method) erode() (in module phenotastic.mesh) (PhenoMesh method)

extract_clean_fill_triangulate() (PhenoMesh method) extract_domaindata() (in module phenotastic.domains) extract_largest() (PhenoMesh method)

F

feature_edges() (PhenoMesh method) fill_holes() (PhenoMesh method) filter_by_curvature() (in module phenotastic.mesh) (PhenoMesh method) filter_curvature() (PhenoMesh method) find_closest_point() (PhenoMesh method)

find_point() (PhenoMesh method) fit_paraboloid() (PhenoMesh method) fit_paraboloid_mesh() (in module phenotastic.mesh) flip_normals() (PhenoMesh method) from_polydata() (PhenoMesh class method) from_yaml() (Pipeline class method) from_yaml_string() (Pipeline class method)

G

get() (OperationRegistry method) get_all_vertex_neighbors() (PhenoMesh method) get_boundary_edges() (in module phenotastic.mesh) (PhenoMesh method) get_boundary_points() (in module phenotastic.mesh) (PhenoMesh method) get_feature_edges() (in module phenotastic.mesh) (PhenoMesh method) get_manifold_edges() (in module phenotastic.mesh) (PhenoMesh method)

get_non_manifold_edges() (in module phenotastic.mesh) (PhenoMesh method) get_preset_yaml() (in module phenotastic) get_vertex_cycles() (in module phenotastic.mesh) (PhenoMesh method) get_vertex_neighbors() (in module phenotastic.mesh) (PhenoMesh method) get_vertex_neighbors_all() (in module phenotastic.mesh)

I

image (PipelineContext attribute), [1]

InvalidImageError InvalidMeshError

L

label_from_image() (in module phenotastic.mesh) (PhenoMesh method) label_mesh() (PhenoMesh method)

list_operations() (OperationRegistry method) list_presets() (in module phenotastic) load_preset() (in module phenotastic)

M

make_manifold() (in module phenotastic.mesh) (PhenoMesh method) manifold_edges() (PhenoMesh method) maxmin() (in module phenotastic.domains) mean() (in module phenotastic.domains) median() (in module phenotastic.domains) merge_angles() (in module phenotastic.domains) merge_depth() (in module phenotastic.domains) merge_disconnected() (in module phenotastic.domains) merge_distance() (in module phenotastic.domains)

merge_engulfing() (in module phenotastic.domains) merge_small() (in module phenotastic.domains) meristem_index (PipelineContext attribute), [1] mesh (PipelineContext attribute), [1] minmax() (in module phenotastic.domains) module phenotastic.domains phenotastic.exceptions phenotastic.mesh phenotastic.phenomesh phenotastic.pipeline

N

n_faces (PhenoMesh property) name (StepConfig attribute), [1]

neighbors (PipelineContext attribute), [1] non_manifold_edges() (PhenoMesh method)

O

OperationRegistry (class in phenotastic)

P

parameters (StepConfig attribute), [1] PhenoMesh (class in phenotastic) phenotastic.domains module phenotastic.exceptions module phenotastic.mesh module phenotastic.phenomesh module phenotastic.pipeline module

PhenotasticError Pipeline (class in phenotastic) PipelineContext (class in phenotastic) PipelineError process() (in module phenotastic.mesh) (PhenoMesh method) process_mesh() (PhenoMesh method) project2surface() (PhenoMesh method) project_to_surface() (in module phenotastic.mesh) (PhenoMesh method)

R

ray_trace() (PhenoMesh method) register() (OperationRegistry method) remesh() (in module phenotastic.mesh) (PhenoMesh method) remesh_decimate() (in module phenotastic.mesh) (PhenoMesh method) remove_bridges() (in module phenotastic.mesh) (PhenoMesh method) remove_by_normals() (in module phenotastic.mesh) (PhenoMesh method) remove_inland_under() (in module phenotastic.mesh) (PhenoMesh method) remove_normals() (PhenoMesh method)

remove_points() (PhenoMesh method) remove_tongues() (in module phenotastic.mesh) (PhenoMesh method) repair() (in module phenotastic.mesh) (PhenoMesh method) repair_small() (PhenoMesh method) repair_small_holes() (in module phenotastic.mesh) (PhenoMesh method) resolution (PhenoMesh property) (PipelineContext attribute), [1] rotate_x() (PhenoMesh method) rotate_y() (PhenoMesh method) rotate_z() (PhenoMesh method) run() (Pipeline method)

S

save_pipeline_yaml() (in module phenotastic) smooth() (PhenoMesh method) smooth_boundary() (in module phenotastic.mesh) (PhenoMesh method)

smooth_taubin() (PhenoMesh method) smoothen() (PhenoMesh method) steepest_ascent() (in module phenotastic.domains) StepConfig (class in phenotastic) subdivide() (PhenoMesh method)

T

to_polydata() (PhenoMesh method)

triangulate() (PhenoMesh method)

V

validate() (Pipeline method) vertex_cycles() (PhenoMesh method)

vertex_neighbors() (PhenoMesh method) vertex_neighbors_all() (PhenoMesh method)